WGS of Lactobacillus jensenii UMB3442 - SRA

SRX6878807: WGS of Lactobacillus jensenii UMB3442
1 ILLUMINA (Illumina MiSeq) run: 293,366 spots, 130.2M bases, 65.7Mb downloads

Design: DNA extracted using Qiagen UltraClean Microbial Kit. Library preparation using Nextera kit. 250x2 paired-end reads.

Submitted by: Loyola University Chicago

Study: Female Urinary Microbiota Genome Sequencing

PRJNA316969 • SRP072679 • All experiments • All runs

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Recently, bacterial communities (microbiota) have been discovered in the female bladder. Thus, the “sterile urine” paradigm is no longer valid. In an effort to provide a comprehensive view of the newly discovered female urinary microbiota (FUM), we have established an Enhanced Quantitative Urine Culture (EQUC) protocol. EQUC isolates bacteria from 75-90% of urine samples deemed 'no growth' by the standard clinical microbiology urine culture method. We have begun to sequence and annotate the genomes of these isolated bacteria.

Sample:

SAMN12797025 • SRS5414555 • All experiments • All runs

Organism: Lactobacillus jensenii

Library:

Name: Lj3442

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 293,366 spots, 130.2M bases, 65.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR10153387	293,366	130.2M	65.7Mb	2019-09-20

ID:: 9050398

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